Category Archives: Software

Postdoc vacancy in the group

We have just been awarded over £0.5m in a Software Infrastructure grant from EPSRC for a project on Beyond Classical Molecular Dynamics: Developing DL_POLY, led by my colleague in Bristol, Prof Neil Allan. This means we will be looking to recruit a talented postdoc in the near future, and informal inquiries – either to me or to Prof Allan – are welcome. This part of the project will focus on a top-quality MPI-parallel implementation of density-functional tight binding (DFTB) for use in DL_POLY and elsewhere. Initial aims will be DFTB (and self-consistent-charge extensions) energies, forces and extrapolation for dynamics, followed by preliminary investigations of DFTB response theory for excited states and excited-state properties.

See here for the advertisement and how to apply.

Molpro 2015

The latest release of Molpro provides a range of new functionality, including methods developed in the Manby group

Wavefunction-in-DFT embedding

A key new addition is wavefunction-in-DFT embedding through the projector method with basis-set truncation. This enables straightforward embedding of practically any electronic structure method implemented in Molpro in a chembedemical environment modelled by DFT. Unlike many embedding methods of this kind
there are no issues with partitioning across covalent bonds.

We have performed many calculations using the combination CCSD(T)-in-DFT, with the expensive coupled-cluster calculation only on a few, chemically active atoms. The exciting opportunity here is that the method all but eliminates dependence on choice of exchange-correlation functional.

The research behind this functionality was carried out by Martina Stella, Simon Bennie and Rob Pennifold in the Manby group; and by Jason Goodpaster and Taylor Barnes in Tom Miller’s group at Caltech.

Distinguishable cluster theory

dcdDistinguishable cluster theory with singles and doubles (DCSD) is a simple modification of CCSD, but with remarkable properties, including the ability to dissociate molecules correctly even with a closed-shell reference state.

The method was developed by Daniel Kats while he was a DFG-funded postdoc in the Manby group. There is much discussion about what exactly this approximation means (but see Daniel’s interesting paper about a screened Coulomb derivation). Whatever it turns out to mean, DCSD is already a useful tool and a powerful addition to the set of available methods. Now in Molpro running it is as simple as replacing ccsd with dcsd in the input (and the computational cost is the same as CCSD). Gradients as well as F12, orbital-optimized and Brueckner variants are available.

Intception integral generator

Thanks to the efforts of Dr James Womack, we now have Intception, an incredibly powerful framework for automatic implementation of Gaussian integrals from equations that define the recurrence relations.intception_logo

More on this later – but feel free to look at the information online and use Intception to generate integrals for your project.

Intception is open source, but as with a compiler, you can generate inputs and outputs under any licensing model you like.